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Biological Image Analysis Toolsets

  1. 3D_Nuclei_Clustering_Tool
  2. Adipocytes Tool
  3. MRI_Analyze_Alignment_of_Muscles_Tool
  4. Analyze Calcium Signals In Spines
  5. Analyze_Cardiomyocytes
  6. Analyze_Complex_Roots_Tool
  7. Analyze Spheroid Cell Invasion In 3D Matrix
  8. Analyse Spots Per Protoplast
  9. Arabidopsis Seedlings Tool
  10. Artemia Tools
  11. Cluster Analysis of Nuclei Tool
  12. Cochlea Hair Cell Counting
  13. Colony Blob Count Tool
  14. Count-Axonal-Projections-Tool
  15. Count Segments
  16. MRI_Count_Spot_Populations_Tool
  17. MRI_Create_Synthetic_Spots_Tool
  18. Fibrosis Tool
  19. FLIM-FRET_Volume_Tool
  20. Foci-Per-Nucleus-Tool
  21. MRI g-ratio Tools
  22. MRI Heights of Surfaces Tools
  23. Intensity-Per-Nucleus-Tool
  24. Intensity-Ratio-Nuclei-Cytoplasm-Tool
  25. Leaf Infection Tools
  26. Lipid Droplets Tool
  27. Measure Cell Surfaces
  28. Measure Rosette Area Tool
  29. Microtubules Tool (3D)
  30. Optodes pH Analysis Tools
  31. Phase Contrast Cell Analysis Tool
  32. MRI_Plot_Tool
  33. Retina Tool
  34. Root Tools
  35. MRI Root Hair Tools
  36. MRI Root Shapes Tool
  37. Skin Tools
  38. Track_Microtubules_Tool
  39. Transfection_Efficiency_Tool
  40. Velocity_Measurement_Tool
  41. Wound Healing Coherency Tool
  42. Wound Healing Tool
  43. Zebrafish Embryo Tools

Workflow and Conversion Toolsets

  1. MRI_Convert_Nikon_Andor_To_Hyperstack
  2. MRI_Convert_Opera_To_Hyperstack
  3. Crop 4D Cells
  4. Fill With Value Tool
  5. Image Conversion Tools
  6. Load-Corresponding-Images
  7. MS2Quant Pre-Processing
  8. MuVi-SPIM_Convert_Tools
  9. MRI_ND_To_Hyperstack
  10. NDPI Tools
  11. Next Image As Hyperstack Tool
  12. Roi Converter Tools
  13. Roi Shuffle Tools

Single Plugin Tools

  1. Align Objects
  2. Batch Split Channels
  3. Create Path Tool (manual tracking)
  4. Discrete_Histogram_Entropy_Tool
  5. Distance_Between_Minima_Tool
  6. Find_and_Subtract_Background_Tool
  7. Kymograph
  8. Measure Skeleton Length
  9. Modify Polygon Selection
  10. Pad Image Names
  11. Quartile Threshold
  12. Separate Nuclei Tool
  13. XYZ Projection Tool

Acquisition

  1. Ovocyte Tool