ImageJ Macro Programming for Biological Image Analysis


Learn how to write ImageJ macros for the automation of image analysis tasks. These are the materials used in the workshop. For each topic there is a short presentation followed by a small exercise that has to be solved by the participants.


A new version is available on github.

The workshop consists of three parts:

Macro toolsets that allow to access the exercises and answers from within FIJI and the exercices and answers as text files are available from the above pages.

Fun stuff

  • play pong on the FIJI example images: pong.ijm

MRI_Macro_Workshop_part_1_toolbar.png - image of the toolbar for part 1 (1.89 KB) Volker Baecker, 11/03/2014 11:32 AM