Publications using MRI Cell Image Analyzer¶
If you published a work in which you used MRI Cell Image Analyzer and your publication is not in the list below, please contact me (volker.baecker at mri.cnrs.fr). Look here for publications using MRI-ImageJ-Macros.
- Vassilev, P., Avvisati, R., Koya, E., and Badiani, A. (2020). Distinct Populations of Neurons Activated by Heroin and Cocaine in the Striatum as Assessed by catFISH. ENeuro 7, ENEURO.0394-19.2019.
- - Philip Vassilev (2018). Arc and homer 1a expression following intravenous administration of heroin and cocaine: a novel application of the catFISH technique. University of Sussex.
- - Zhi, X., Wang, J., Lu, P., Jia, J., Shen, H.-B., and Ning, G. (2018). AdipoCount: A New Software for Automatic Adipocyte Counting. Frontiers in Physiology 9.
- - Babini, G., Morini, J., Baiocco, G., Mariotti, L., and Ottolenghi, A. (2015). In vitro γ-ray-induced inflammatory response is dominated by culturing conditions rather than radiation exposures. Scientific Reports 5.
- - Li J, Tang Y, Wang Y, Tang R, Jiang W, Yang G-Y, et al.
Neurovascular Recovery via Cotransplanted Neural and Vascular Progenitors Leads to Improved Functional Restoration after Ischemic Stroke in Rats.
Stem Cell Reports 2014 Jun
- - Barboza Barquero, Luis Orlando
The identification of genetic variation for gibberellin biosynthesis and signalling among Arabidopsis thaliana accessions
2014, PhD thesis, Universität zu Köln
- - 1.Levis, H. J., Menzel-Severing, J., Drake, R. A. L. & Daniels, J. T. Plastic Compressed Collagen Constructs for Ocular Cell Culture and Transplantation: A New and Improved Technique of Confined Fluid Loss. Current Eye Research 38, 41–52 (2013).
- - Doumayrou J, Leblaye S, Froissart R, Michalakis Y.
Reduction of leaf area and symptom severity as proxies of disease-induced plant mortality: The example of the Cauliflower mosaic virus infecting two Brassicaceae hosts.
Virus Research. 2013 Sep;176(1-2):91–100.
- - Doumayrou J, Avellan A, Froissart R, Michalakis Y.
AN EXPERIMENTAL TEST OF THE TRANSMISSION-VIRULENCE TRADE-OFF HYPOTHESIS IN A PLANT VIRUS: TRANSMISSION-VIRULENCE TRADE-OFF IN A PLANT VIRUS.
Evolution. 2013 Feb;67(2):477–86.
- - Joosen RVL.
Imaging genetics of seed performance.
Wageningen University; 2013
- - Swangchan-Uthai T, Lavender CRM, Cheng Z, Fouladi-Nashta AA, Wathes DC.
Time Course of Defense Mechanisms in Bovine Endometrium in Response to Lipopolysaccharide
Biology of Reproduction 2012 Oct
- - Elias S, Delestre C, Ory S, Marais S, Courel M, Vazquez-Martinez R, Bernard S, Coquet L, Malagon MM, Driouich A, Chan P, Gasman S, Anouar Y, Montero-Hadjadje M.
Chromogranin a induces the biogenesis of granules with calcium- and actin-dependent dynamics and exocytosis in constitutively secreting cells.
Endocrinology 2012 Sep;153(9):4444–4456
- - De Vylder J, Vandenbussche FJ, Hu Y, Philips W, Van Der Straeten D.
Rosette Tracker: an open source image analysis tool for automatic quantification of genotype effects.
Plant Physiol. 2012 Aug;
- - Cristina Bischin, Ş. Ţălu, R. Silaghi-Dumitrescu, M. Ţălu, S. Giovanzana, Carmen Alina Lupaşcu
COMPUTERIZED MORPHOMETRIC ASSESSMENT OF THE HUMAN RED BLOOD CELLS TREATED WITH CISPLATIN
Annals of RSCB, Vol 17, issue 2, 2012, p. 105-110
- - Corina Rosioru, S. Talu, M. Talu, S. Giovanzana, C. Craciun
MORPHOMETRIC ASSESSMENTS FOR THE HEALTHY RAT HEPATOCYTES
Annals of RSCB, Vol 17, issue 1, 2012, p. 74-79
- - Thangasamy, S., Chen, P.-W., Lai, M.-H., Chen, J. & Jauh, G.-Y.
Rice LGD1 containing RNA binding activity affects growth and development through alternative promoters
The Plant Journal no–no (2012).doi:10.1111/j.1365-313X.2012.04989.x
- - Godlewski G, Gaubert J, Cristol-Gaubert R, Radi M, Baecker V, Travo P, Prudhomme M, Prat-Pradal
Moving and fusion of the pancreatic buds in the rat embryos during the embryonic period (carnegie stages 13–17) by a three-dimensional computer-assisted reconstruction
Surg Radiol Anat 2011 May; DOI: 10.1007/s00276-011-0800-3
- - Hummel I, Pantin F, Sulpice R, Piques M, Rolland G, Dauzat M, Christophe A, Pervent M, Bouteille M, Stitt M, Gibon Y, Muller B.
Arabidopsis Plants Acclimate to Water Deficit at Low Cost through Changes of Carbon Usage: An Integrated Perspective Using Growth, Metabolite, Enzyme, and Gene Expression Analysis
PLANT PHYSIOLOGY 2010;154(1):357-372.
- - L.F. Dawson, J.K. Phillips, P.M. Finch, J.J. Inglis and P.D. Drummond
Expression of α1-adrenoceptors on peripheral nociceptive neurons
Neuroscience, Accepted Article, doi:10.1016/j.neuroscience.2010.11.064, Available online 20 December 2010
- - Mara Ceridono, Stéphane Ory, Fanny Momboisse, Sylvette Chasserot-Golaz, Sébastien Houy, Valérie Calco, Anne-Marie Haeberlé, Valérie Demais, Yannick Bailly, Marie-France Bader & Stéphane Gasman
Selective recapture of secretory granule components after full collapse exocytosis in neuroendocrine chromaffin cells
Traffic, Accepted Article, DOI: 10.1111/j.1600-0854.2010.01125.x, 2010
- - M. Radi, J. Gaubert, R. C. Gaubert, V. Baecker, P. Travo, M. Prudhomme, G. Godlewski, D. Pradal-Prat
Rotation Of The Two Pancreatic Buds In The Rat And Man Embryos During The Embryonic Period. Three Dimensional Computer Assisted Reconstruction.
ARS Medica Tomitana, vol. XV - nr. 2 (61) april - june 2010
- - Anne-Sophie Bach, Sandrine Enjalbert, Franck Comunale, Stéphane Bodin, Nicolas Vitale, Sophie Charrasse, and Cécile Gauthier-Rouvière
ADP-Ribosylation Factor 6 Regulates Mammalian Myoblast Fusion through Phospholipase D1 and Phosphatidylinositol 4,5-Bisphosphate Signaling Pathways
Mol. Biol. Cell, Vol. 21, Issue 14, 2412-2424, July 15, 2010
- - Brazier H, Pawlak G, Vives V, Blangy A
The Rho GTPase Wrch1 regulates osteoclast precursor adhesion and migration
The International Journal of Biochemistry & Cell Biology 2009;41(6):1391-1401
- - Ronny V. L. Joosen, Jan Kodde, Leo A. J. Willems, Wilco Ligterink, Linus H. W. van der Plas and Henk W.M. Hilhorst
germinator: a software package for high-throughput scoring and curve fitting of Arabidopsis seed germination
The Plant Journal, Published Online: 22 Dec 2009, doi: 10.1111/j.1365-313X.2009.04116.x
- - M. Radi, J. Gaubert, R. Cristol-Gaubert, V. Baecker, P. Travo, M. Prudhomme, G. Godlewski and D. Prat-Pradal
A 3D reconstruction of pancreas development in the human embryos during embryonic period
Surgical and Radiologic Anatomy, DOI 10.1007/s00276-009-0533-8, Published online: 18 November 2009
- - N. Bouquier, E. Vignal, S. Charrasse, M. Weill, S. Schmidt, J. Léonetti, A. Blangy, P. Fort
A Cell Active Chemical GEF Inhibitor Selectively Targets the Trio/RhoG/Rac1 Signaling Pathway
Chemistry & Biology, Volume 16, Issue 6, Pages 657-666, June 2009
- - MOMBOISSE F. Dynamique des lipides au cours du cycle d’exo-endocytose dans les cellules neuroendocrines : rôle des protéines Rac1 et Scramblase. Université de Strasbourg; 2009.
- - Naoto YOSHIDA, A Basic Study on 'Digital Camera Spectroscopy' for Identifying Color Materials
National Research Institute for Cultural Properties, Tokyo, 2009
- - Nicolas Cougot, Suvendra N. Bhattacharyya, Lucie Tapia-Arancibia, Remy Bordonné, Witold Filipowicz, Edouard Bertrand and Florence Rage
Dendrites of Mammalian Neurons Contain Specialized P-Body-Like Structures That Respond to Neuronal Activation
The Journal of Neuroscience, December 17, 2008, 28(51):13793-13804; doi:10.1523/JNEUROSCI.4155-08.2008
- - J Gaubert, R Cristol-Gaubert, M Radi, V Baecker, P Travo, M Prudhomme, G Godlewski, D Prat-Pradal
Contribution to the 3D computer assisted reconstruction of pancreatic buds in the rat embryos
Surg Radiol Anat. 2008 Sep 24; : 18813869
- - Bilada Bilican, Christelle Fiore-Heriche, Alastair Compston, Nicholas D. Allen, Siddharthan Chandran
Induction of Olig2+ Precursors by FGF Involves BMP Signalling Blockade at the Smad Level
PLoS ONE 3(8): e2863. doi:10.1371/journal.pone.0002863, Published: August 6, 2008
- - Marietta Barro, Gilles Carnac, Sébastien Flavier, Jacques Mercier, Yegor Vassetzky and Dalila Laoudj-Chenivesse
Myoblasts from affected and non affected FSHD muscles exhibit morphological differentiation defects
Journal of Cellular and Molecular Medicine, 15 May 2008; “Postprint”;10.1111/j.1582-4934.2008.00368.x
- - M Fortier, F Comunale, J Kucharczak, A Blangy, S Charrasse and C Gauthier-Rouvière
RhoE controls myoblast alignment prior fusion through RhoA and ROCK
Cell Death and Differentiation advance online publication, 28 March 2008; doi: 10.1038/cdd.2008.34
- - Jérôme Nigou, Thierry Vasselon, Aurélie Ray, Patricia Constant, Martine Gilleron, Gurdyal S. Besra, Iain Sutcliffe, Gérard Tiraby, and Germain Puzo
Mannan Chain Length Controls Lipoglycans Signaling via and Binding to TLR21
J. Immunol., May 2008; 180: 6696 - 6702.
- - Fabien Binamé, Patrice Lassus, and Urszula Hibner
TGF-{beta} Controls the Directional Migration of Hepatocyte Cohorts by Modulating Their Adhesion to Fibronectin
MBC in Press, published online ahead of print December 19, 2007, Mol. Biol. Cell 10.1091/mbc.E07-09-0967
- - Charrasse S, Comunale F, Fortier M, Portales-Casamar E, Debant A, Gauthier-Rouviere C.
M-Cadherin Activates Rac1 GTPase through the Rho-GEF Trio during Myoblast Fusion
Mol Biol Cell. 2007 May;18(5):1734-43. Epub 2007 Mar 1. PMID: 17332503
- - Cross JM, von Korff M, Altmann T, Bartzetko L, Sulpice R, Gibon Y, Palacios N, Stitt M.
Variation of enzyme activities and metabolite levels in 24 Arabidopsis accessions growing in carbon-limited conditions
Plant Physiol. 2006 Dec;142(4):1574-88. Epub 2006 Oct 27. PMID: 17085515
Posters for which MRI Cell Image Analyzer has been used¶
- G. Godlewski, J. Gaubert, R. Cristol-Gaubert, M. Prudhomme, M. Radi, V. Baecker, P. Travo, M. Bossy, D. Prat
Contribution to the 3D Reconstruction of Pancreatic Buds of Human and Rat Embryos Carnegie Stage 12 to 23
Surgical and Radiologic Anatomy, Volume 29, Number 6, 2007, p. 511-526, S3-P163.
Publications for which MRI Cell Image Analyzer has been used¶
- Fabien Binam, Patrice Lassus, and Urszula Hibner
Transforming Growth Factor Controls the Directional Migration of Hepatocyte Cohorts by Modulating Their Adhesion to Fibronectin
Molecular Biology of the Cell, Vol. 19, 945–956, March 2008
- - Briançon-Marjollet et al.
Trio mediates netrin-1-induced Rac1 activation in axon outgrowth and guidance
Mol. Cell. Biol. doi:10.1128/MCB.00998-07
- - Stéphane Ory, Hélène Brazier and Anne Blangy
Identification of a bipartite focal adhesion localization signal of RhoU/Wrch-1, a Rho family GTPase that regulates cell adhesions and migration
Biology of the Cell (2007) Immediate Publication, doi:10.1042/BC20070058, Published as Immediate Publication 10 July 2007
- - Dorothée Molle , Paolo Maiuri , Stéphanie Boireau , Edouard Bertrand , Anna Knezevich , Alessandro Marcello and Eugenia Basyuk
A real-time view of the TAR:Tat:P-TEFb complex at HIV-1 transcription sites
Retrovirology 2007, 4:36
- - Stéphanie Boireau , Paolo Maiuri , Eugenia Basyuk , Manuel de la Mata , Anna Knezevich , Bérangère Pradet-Balade , Volker Bäcker, Alberto Kornblihtt , Alessandro Marcello , Edouard Bertrand
The transcriptional cycle of HIV-1 in real-time and live cells
J Cell Biol. 2007 Oct 22;179 (2):291-304