Publications using MRI-ImageJ-macros

If you published a work in which you used a macro written at Montpellier RIO Imaging and your publication is not in the list below, please contact me (volker.baecker at mri.cnrs.fr). Look here for publications using MRI Cell Image Analyzer.

  1. Sperlich, J.; Teusch, N. Pseudopterosin Inhibits Proliferation and 3D Invasion in Triple Negative Breast Cancer by Agonizing Glucocorticoid Receptor Alpha. Preprints 2018, 2018070224 (doi: 10.20944/preprints201807.0224.v1).
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  2. Hopkins, B.L., Nadler, M., Skoko, J.J., Bertomeu, T., Pelosi, A., Shafaei, P.M., Levine, K., Schempf, A., Pennarun, B., Yang, B., et al. (2018). A Peroxidase Peroxiredoxin 1-Specific Redox Regulation of the Novel FOXO3 microRNA Target let-7. Antioxidants & Redox Signaling 28, 62–77.
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  3. Saini, M., Verma, A., and Mathew, S.J. (2018). SPRY2 is a novel MET interactor that regulates metastatic potential and differentiation in rhabdomyosarcoma. Cell Death & Disease 9.
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  4. Sociale, M., Wulf, A.-L., Breiden, B., Klee, K., Thielisch, M., Eckardt, F., Sellin, J., Bülow, M.H., Löbbert, S., Weinstock, N., et al. (2018). Ceramide Synthase Schlank Is a Transcriptional Regulator Adapting Gene Expression to Energy Requirements. Cell Reports 22, 967–978
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  5. Fung, E., Richter, C., Yang, H., Schäffer, I., Fischer, R., Kessler, B.M., Bassermann, F., and D’Angiolella, V. (2018). FBXL13 directs the proteolysis of CEP192 to regulate centrosome homeostasis and cell migration. EMBO Reports e44799.
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  6. Jagodzinska, J., Sarzi, E., Cavalier, M., Seveno, M., Baecker, V., Hamel, C., Péquignot, M., and Delettre, C. (2017). Optical Coherence Tomography: Imaging Mouse Retinal Ganglion Cells In Vivo. Journal of Visualized Experiments.
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  7. Jade Marie Edenvirg Fontanilla Lasiste (2017). METFORMIN INHIBITS EPITHELIAL-TO-MESENCHYMAL TRANSITION IN LENS EPITHELIAL CELLS. Master of Science (MSc) in Pathology. McGill University.
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  8. Sun, X., Wang, S.C., Wei, Y., Luo, X., Jia, Y., Li, L., Gopal, P., Zhu, M., Nassour, I., Chuang, J.-C., et al. (2017). Arid1a Has Context-Dependent Oncogenic and Tumor Suppressor Functions in Liver Cancer. Cancer Cell 32, 574–589.e6.
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  9. Chulkina, M., Negmadjanov, U., Lebedeva, E., Pichugin, A., Mazurov, D., Ataullakhanov, R., and Holmuhamedov, E. (2017). Synthetic peptide TEKKRRETVEREKE derived from ezrin induces differentiation of NIH/3T3 fibroblasts. European Journal of Pharmacology 811, 249–259.
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  10. Sawamiphak, S., Kontarakis, Z., Filosa, A., Reischauer, S., and Stainier, D.Y.R. (2017). Transient cardiomyocyte fusion regulates cardiac development in zebrafish. Nature Communications 8.
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  11. Mahendra, A., Yang, X., Abnouf, S., Park, D., Soomro, S., Adolacion, J.R.T., Roszik, J., Coarfa, C., Romain, G., Wanzeck, K., et al. (2017). Beyond Autoantibodies: Biological Roles Of Human Autoreactive B Cells In Rheumatoid Arthritis Revealed By Whole Transcriptome Profiling. preprint
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  12. Hauck, P.M., Wolf, E.R., Olivos, D.J., Batuello, C.N., McElyea, K.C., McAtarsney, C.P., Cournoyer, R.M., Sandusky, G.E., and Mayo, L.D. (2017). Early-Stage Metastasis Requires Mdm2 and Not p53 Gain of Function. Molecular Cancer Research 15, 1598–1607.
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  13. Lounis, M.A., Bergeron, K.-F., Burhans, M.S., Ntambi, J.M., and Mounier, C. (2017). Oleate activates SREBP-1 signaling activity in SCD1-deficient hepatocytes. American Journal of Physiology-Endocrinology and Metabolism 313, E710–E720.
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  14. Auer, S., Rinnerthaler, M., Bischof, J., Streubel, M.K., Breitenbach-Koller, H., Geisberger, R., Aigner, E., Cadamuro, J., Richter, K., Sopjani, M., et al. (2017). The Human NADPH Oxidase, Nox4, Regulates Cytoskeletal Organization in Two Cancer Cell Lines, HepG2 and SH-SY5Y. Frontiers in Oncology 7.
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  15. Breznau, E.B., Murt, M., Blasius, T.L., Verhey, K.J., and Miller, A.L. (2017). The MgcRacGAP SxIP motif tethers Centralspindlin to microtubule plus ends in Xenopus laevis. Journal of Cell Science 130, 1809–1821.
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  16. Burrell, T., Fozard, S., Holroyd, G.H., French, A.P., Pound, M.P., Bigley, C.J., James Taylor, C., and Forde, B.G. (2017). The Microphenotron: a robotic miniaturized plant phenotyping platform with diverse applications in chemical biology. Plant Methods 13.
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  17. Grbeša, I., Kalo, A., Belužić, R., Kovačević, L., Lepur, A., Rokić, F., Hochberg, H., Kanter, I., Simunović, V., Muńoz-Torres, P.M., et al. (2017). Mutations in S-adenosylhomocysteine hydrolase (AHCY) affect its nucleocytoplasmic distribution and capability to interact with S-adenosylhomocysteine hydrolase-like 1 protein. European Journal of Cell Biology 96, 579–590.
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  18. Kabała-Dzik, A., Rzepecka-Stojko, A., Kubina, R., Jastrzębska-Stojko, Ż., Stojko, R., Wojtyczka, R., and Stojko, J. (2017). Migration Rate Inhibition of Breast Cancer Cells Treated by Caffeic Acid and Caffeic Acid Phenethyl Ester: An In Vitro Comparison Study. Nutrients 9, 1144.
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  19. Morry, J., Ngamcherdtrakul, W., Gu, S., Reda, M., Castro, D.J., Sangvanich, T., Gray, J.W., and Yantasee, W. (2017). Targeted Treatment of Metastatic Breast Cancer by PLK1 siRNA Delivered by an Antioxidant Nanoparticle Platform. Molecular Cancer Therapeutics 16, 763–772.
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  20. Juneja, M., Kobelt, D., Walther, W., Voss, C., Smith, J., Specker, E., Neuenschwander, M., Gohlke, B.-O., Dahlmann, M., Radetzki, S., et al. (2017). Statin and rottlerin small-molecule inhibitors restrict colon cancer progression and metastasis via MACC1. PLOS Biology 15, e2000784.
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  21. Purohit, M.P., Verma, N.K., Kar, A.K., Singh, A., Ghosh, D., and Patnaik, S. (2017). Inhibition of Thioredoxin Reductase by Targeted Selenopolymeric Nanocarriers Synergizes the Therapeutic Efficacy of Doxorubicin in MCF7 Human Breast Cancer Cells. ACS Applied Materials & Interfaces 9, 36493–36512.
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  22. Qiao, Y., Chen, J., Lim, Y.B., Finch-Edmondson, M.L., Seshachalam, V.P., Qin, L., Jiang, T., Low, B.C., Singh, H., Lim, C.T., et al. (2017). YAP Regulates Actin Dynamics through ARHGAP29 and Promotes Metastasis. Cell Reports 19, 1495–1502.
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  23. Sahoo, S.S., Quah, M.Y., Nielsen, S., Atkins, J., Au, G.G., Cairns, M.J., Nahar, P., Lombard, J.M., and Tanwar, P.S. (2017). Inhibition of extracellular matrix mediated TGF-β signalling suppresses endometrial cancer metastasis. Oncotarget.
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  24. Buesch, S., Schaepermeier, S., D’Souza, T., Ortmann, B., Schwartz, C., and Schroeder, J. (2017). Abstract 822: Simple and easy monitoring of tube formation and migration assays with the CytoSMART TM Live Cell Imaging System. Cancer Research 77, 822–822. See also this poster
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  25. Ottosson, M., Jakobsson, A., and Johansson, F. (2017). Accelerated Wound Closure - Differently Organized Nanofibers Affect Cell Migration and Hence the Closure of Artificial Wounds in a Cell Based In Vitro Model.
    PLOS ONE 12, e0169419.
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  26. Colitti, M., Pošćić, N., and Stefanon, B. (2017). Proliferation and apoptosis in subcutaneous adipose tissue of lactating cows with different genetic merit for milk yield. Tissue and Cell 49, 72–77.
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  27. MARY E. COLE, and SAMUEL D. STOUT, Poster: Three-dimensional Reconstruction of Vascular Pore Networks in the Human Rib from Two-dimensional Serial Sections, Ohio State University. 2017
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  28. Liu, Z., Qiao, Q., Sun, Y., Chen, Y., Ren, B., and Liu, X. (2017). Sesamol ameliorates diet-induced obesity in C57BL/6J mice and suppresses adipogenesis in 3T3-L1 cells via regulating mitochondria-lipid metabolism#!. Molecular Nutrition & Food Research 61, 1600717.
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  29. Lucija Kovačević (2017). NEDOSTATAK S-ADENOZILHOMOCISTEIN HIDROLAZE: MOLEKULARNI MEHANIZMI NOVOG OBOLJENJA. UNIVERSITIY OF RIJEKA.
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  30. Tantale, K., Mueller, F., Kozulic-Pirher, A., Lesne, A., Victor, J.-M., Robert, M.-C., Capozi, S., Chouaib, R., Bäcker, V., Mateos-Langerak, J., et al. (2016). A single-molecule view of transcription reveals convoys of RNA polymerases and multi-scale bursting. Nature Communications 7, 12248.
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  31. Saleur, A., Baecker, V., Dyhrfjeld-Johnsen, J., poster: AUTOMATED CELL COUNTING IN COCHLEAR HISTOLOGICAL SAMPLES, 53. Workshop Inner Ear Biology, Montpellier, 2016
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  32. Alvarado-Ruiz, L., Martinez-Silva, M.G., Torres-Reyes, L.A., Pina-Sanchez, P., Ortiz-Lazareno, P., Bravo-Cuellar, A., Aguilar-Lemarroy, A., and Jave-Suarez, L.F. (2016). HOXA9 is Underexpressed in Cervical Cancer Cells and its Restoration Decreases Proliferation, Migration and Expression of Epithelial-to-Mesenchymal Transition Genes. Asian Pacific Journal of Cancer Prevention 17, 1037–1047.
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  33. Yong, L.-K., Lai, S., Liang, Z., Poteet, E., Chen, F., van Buren, G., Fisher, W., Mo, Q., Chen, C., and Yao, Q. (2016). Overexpression of Semaphorin-3E enhances pancreatic cancer cell growth and associates with poor patient survival. Oncotarget 7.
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  34. Alexandra Candib (2016). Characterization and Validation of MGMT-binding Partners Using a Proteomic-based Approach in Glioblastoma. McGill University, Montreal, Canada. McGill University.
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  35. Elaina B. Breznau (2016). Regulation of epithelial cytokinesis and cell-cell junctions by MgcRacGAP. University of Michigan.
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  36. Zhang, R.-Y., Yu, Z.-H., Zeng, L., Zhang, S., Bai, Y., Miao, J., Chen, L., Xie, J., and Zhang, Z.-Y. (2016). SHP2 phosphatase as a novel therapeutic target for melanoma treatment. Oncotarget.
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  37. Walter, Thomas M. & Merish, S. (2016). In-Vitro wound healing activity of Herbal topical formulation on H9C2 Heart cells. Siddha Papers 0974-2522. 2016(1). 1-11.
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  38. Bissonnette, L., Drissennek, L., Antoine, Y., Tiers, L., Hirtz, C., Lehmann, S., Perrochia, H., Bissonnette, F., Kadoch, I.-J., Haouzi, D., et al. (2016). Human S100A10 plays a crucial role in the acquisition of the endometrial receptivity phenotype. Cell Adhesion & Migration 10, 282–298.
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  39. Rodriguez-Furlán, C., Miranda, G., Reggiardo, M., Hicks, G.R., and Norambuena, L. (2016). High throughput selection of novel plant growth regulators: Assessing the translatability of small bioactive molecules from Arabidopsis to crops. Plant Science 245, 50–60.
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  40. Dalgaard, K., Landgraf, K., Heyne, S., Lempradl, A., Longinotto, J., Gossens, K., Ruf, M., Orthofer, M., Strogantsev, R., Selvaraj, M., et al. (2016). Trim28 Haploinsufficiency Triggers Bi-stable Epigenetic Obesity. Cell 164, 353–364.
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  41. Hunter, R.L., and Agnew, A.M. (2016). Intraskeletal variation in human cortical osteocyte lacunar density: Implications for bone quality assessment. Bone Reports 5, 252–261.
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  42. Goliwas, K.F., Marshall, L.E., Ransaw, E.L., Berry, J.L., and Frost, A.R. (2016). A recapitulative three-dimensional model of breast carcinoma requires perfusion for multi-week growth. Journal of Tissue Engineering 7.
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  43. Ceddia, R. P. et al.
    The PGE 2 EP3 Receptor Regulates Diet-Induced Adiposity in Male Mice.
    Endocrinology 157, 220–232 (2016)
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  44. Monteith, C.E., Brunner, M.E., Djagaeva, I., Bielecki, A.M., Deutsch, J.M., and Saxton, W.M. (2016). A Mechanism for Cytoplasmic Streaming: Kinesin-Driven Alignment of Microtubules and Fast Fluid Flows. Biophysical Journal 110, 2053–2065.
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  45. MARCIO APARECIDO PEREIRA (2016). Tratamento com células derivadas do fígado embrionário retarda a progressão da fibrose hepática em ratos. Universidade de São Paulo.
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  46. Cormier, N., Yeo, A., Fiorentino, E., and Paxson, J. (2015). Optimization of the Wound Scratch Assay to Detect Changes in Murine Mesenchymal Stromal Cell Migration After Damage by Soluble Cigarette Smoke Extract. Journal of Visualized Experiments.
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  47. Leach, D.A., Need, E.F., Toivanen, R., Trotta, A.P., Palenthorpe, H.M., Tamblyn, D.J., Kopsaftis, T., England, G.M., Smith, E., Drew, P.A., et al. (2015). Stromal androgen receptor regulates the composition of the microenvironment to influence prostate cancer outcome. Oncotarget 6, 16135–16150.
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  48. Lettieri Barbato, D., Tatulli, G., Maria Cannata, S., Bernardini, S., Aquilano, K., and Ciriolo, M.R. (2015). Glutathione Decrement Drives Thermogenic Program In Adipose Cells. Scientific Reports 5.
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  49. Li, J.J., Ferry, R.J., Diao, S., Xue, B., Bahouth, S.W., and Liao, F.-F. (2015). Nedd4 Haploinsufficient Mice Display Moderate Insulin Resistance, Enhanced Lipolysis, and Protection Against High-Fat Diet-Induced Obesity. Endocrinology 156, 1283–1291.
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  50. Nathalia S. Laszkiewicz, Graziela G. Romagnoli, Carolina M. Gorgulho, Ethel
    Cesarman, Ramon Kaneno, Deilson E. Oliveira. In vitro migration and cellular invasion of human cells expressing variants of the Epstein-Barr virus LMP1 oncoprotein. In Nathália Suiti Laszkiewicz (2015). Migração e invasão celular in vitro de células humanas expressando variantes da proteína LMP1 do vírus de Epstein-Barr. Mestre em Patologia. UNIVERSIDADE ESTADUAL PAULISTA “JÚLIO DE MESQUITA FILHO.”
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  51. Sánchez-Bailón, M.P., Calcabrini, A., Mayoral-Varo, V., Molinari, A., Wagner, K.-U., Losada, J.P., Ciordia, S., Albar, J.P., and Martín-Pérez, J. (2015). Cyr61 as mediator of Src signaling in triple negative breast cancer cells. Oncotarget 6, 13520–13538.
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  52. Pfister, N.T., Fomin, V., Regunath, K., Zhou, J.Y., Zhou, W., Silwal-Pandit, L., Freed-Pastor, W.A., Laptenko, O., Neo, S.P., Bargonetti, J., et al. (2015). Mutant p53 cooperates with the SWI/SNF chromatin remodeling complex to regulate VEGFR2 in breast cancer cells.. Genes & Development 29, 1298–1315.
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  53. Gutiérrez, S., Pirolles, E., Yvon, M., Baecker, V., Michalakis, Y., and Blanc, S. (2015). The Multiplicity of Cellular Infection Changes Depending on the Route of Cell Infection in a Plant Virus. Journal of Virology 89, 9665–9675.
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  54. Puškaš N, Zaletel I, Stefanović BD, Ristanović D.
    Fractal dimension of apical dendritic arborization differs in the superficial and the deep pyramidal neurons of the rat cerebral neocortex.
    Neuroscience Letters. 2015 Mar;589:88–91.
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  55. Sushobhna Batra, Richard A. Rabin
    Poster: Effects of Ethanol on Brain Injury: Role of Microglial Migration
    2015, University at Buffalo
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  56. Mary Elizabeth Cole. A Semi-Automatic Method for Intracortical Porosity Quantification With Application to Intraskeletal Variability. Ohio State University. 2014
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  57. Li, Jingjing , Effect of Nedd4 Haploinsufficiency on Insulin Sensitivity, Adiposity and Neuronal Behaviors (2014). Theses and Dissertations (ETD). Paper 141.
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  58. Rode NO, Lievens EJP, Flaven E, Segard A, Jabbour-Zahab R, Sanchez MI, et al.
    Why join groups? Lessons from parasite-manipulated Artemia.
    Ostfeld R, editor. Ecology Letters. 2013 Apr;16(4):493–501.
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  59. Osman OS, Selway JL, Kępczyńska MA, Stocker CJ, O’Dowd JF, Cawthorne MA, et al.
    A novel automated image analysis method for accurate adipocyte quantification.
    Adipocyte. 2013 Jul 1;2(3):0–1.
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  60. Macherel D, Abdelilah BENAMAR, Pierart A, Baecker V, Avelange-Macherel M-H, Rolland A, Gaudichon S, Di Gioia L.
    Simple system using natural mineral water for high-throughput phenotyping of Arabidopsis thaliana seedlings in liquid culture.
    International Journal of High Throughput Screening 2013 Feb;1.
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  61. Baecker V.
    ImageJ Macro Tool Sets for Biological Image Analysis.
    In: ImageJ User and Developer Conference 2012. Luxembourg:
    Centre de Recherche Public Henri Tudor; 2012; ISBN: 2-919941-18-6; DOI: 10.13140/RG.2.1.2868.9446
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  62. Bouteillé M, Rolland G, Balsera C, Loudet O, Muller B.
    Disentangling the Intertwined Genetic Bases of Root and Shoot Growth in Arabidopsis
    PLoS ONE 2012 Feb;7(2):e32319
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  63. Louarn G, Andrieu B, Giauffret C.
    A size-mediated effect can compensate for transient chilling stress affecting maize (Zea mays) leaf extension.
    New Phytologist 2010 Jul;187(1):106–118.

Links using MRI-ImageJ-macros

  1. Adipocyte Cell Counting with_ImageJ, Bridges Lab, University of Michigan, 2015
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  2. Protocolo de ENSAYO DE HERIDA, IIBM, Universidad Autónoma de Madrid