The accounting system of mri. Users buy hours that are counted down when they use resources of the facility.
Problématique d'analyse d'images :
- Mesure d'intensité de spots dans le temps
- Tracking de cellules avec division / segmentation
The goal of this project is the migration of the FISH-quant software from MATLAB to python.
FISH-quant is a program written in Matlab for analyzing single molecule mRNA FISH data. It allows counting the number of mature and nascent transcripts in 3D images. ...
- Image Analysis with MATLAB
Matlab scripts for doing image analysis written at the MRI facility
- imagej workshop
MRI offers a workshop "Image analysis with ImageJ". This projects serves to develop the workshop and to make the different documents available.
ImageJ macros for biological image analysis
- MRI Cell Image Analyzer
”Cell Image Analyzer” adds a visual scripting interface to ImageJ’s capabilities, which allows creating applications from
existing operations by drag and drop. It provides support to create batch applications as well as interactive
applications. ”Cell Image Analyzer” is used at the microscopy facility Montpellier RIO Imaging to create custom...
- MRI Library
Libs for MRI projects
- MRI Website
Development of the new website of the MRI facility, based on JOOMLA.
Upload Sftp automatique
- Quality Management
Different small projects that support the quality management at MRI.
- global login
- dysfunction warning
- autonomy system
- efficiency data in glpi
- 005_Core Facility Management System
The project consists of a set of open source tools that allow to manage core facilities. Some of them are third party tools, some are developed at MRI.
The accounting system allows to follow the usage of the resources of a facility. It manages credits and tariffs and allows to create reports.
The system allows to manage the autonomy of users concerning a resource or a category of resources. A user is declared autonomous for a given category of resources after he received instructions of how to use this kind of resources. He remains autonomous as long as he uses the resource. However after he did not use the kind of resource for a longer time he loses his autonomy. ...
The clients of the cfms system. Mainly the client that will be installed on the acquisition and analysis machines and that counts down the hours while the machine is used.
The dysfunction management allows to inform users about dysfunctions of resources.
A system that allows to create reports concerning the overbooking of resources.
It reads the worked hours from cfms-accounting-system and the booked hours from
an arbitrary reservation system, using an appropriate adapter.
The server-side implementation of the core facility management system.
A number of rest-services used by the different clients of the CFMS.
Authentication and integration of the third party tools into the cfms for MRI.
The project allows to communicate with a distant huscript. In order to do so a server that communicates via a socket is implemented in tcl. The server manages sessions. A user can start a session from the distance on the server, send a number of commands that are executed in huscript, get the results back and close the session. ...
Remote-ImageJ allows to run ImageJ macros on a remote machine. The communication between distant ImageJ-plugins is based on a custom messaging middleware called “Simple Java Message Exchange” (SIJAME). The SIJAME-server listens on a socket and handles each incoming connection in a separate thread. Based on the SIJAME-middleware a Remote-Macro-Runner has been written. The Remote-Macro-Runner-Server-Console allows to start and stop the server and to view log-messages. The Modal-Dialog-Killer avoids that modal dialogs, opened by a macro or by an error in a macro, block the macro execution on the server. A local macro is run on a distant machine, with the help of the remote-macro-runner-client-application. To set input files and folders, and output folders, using a JFileChooser-dialog and a list-editor, the IOSettings-plugin is used. These settings are accessible from within the macro. The RemoteFilesystemView implements a filesystem-view as a proxy that gets its information from a remote machine....
L'équipe TIGR (Technologies Informatique et Gestion des Ressources)a pour mission de:
- développer des applications de gestion, de logiciels scientifiques et d'analyse d'images ;
- d'exploiter et de faire évoluer l'infrastructure informatique(réseau, gestion de parc, serveurs) ;...
Central Image Database and Analysis tools.
WIDE is a software development project initiated and run by Montpellier Rio Imaging. It aims mainly at facilitating the management of the data produced by the resources of the facility, all driven by a computer (microscopes, flow cytometers and cell sorters, XR microtomograph). All acquired data can be uploaded into WIDE. They can then easily be managed on the WIDE website, using any computer that has an internet connection....
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