User documentation

mri grid tool

04/06/2011 01:17 PM

The MRI Grid is a tool in MRI Cell Image Analyzer, that can be used to associate measurements with labelled positions on a board.

MRI Object Modeling Workbench - User Manual

04/06/2011 01:22 PM

The OMW allows to extract objects from large datasets. It has been created for the purpose of 3d-modelling but other usages are possible, for example object tracing in time series.

3d modeling with the MRI Object Modeling Workbench

04/06/2011 01:25 PM

How to do 3d-modeling with the omw in 7 steps

MRI CIA Operations Manual

04/06/2011 03:36 PM

A description of the operations available in the CIA. The documents is created from the online help.

MRI CIA Toolbox Manual

04/06/2011 03:45 PM

The user-manual of the mri toolbox


04/15/2011 05:28 PM

The application measures the total length and the average thickness of filament like structures.

Technical documentation

Cell Image Analyzer

04/05/2011 04:10 PM

A description of the first version of the MRI Cell Image Analyzer that has been published as
Volker Bäcker and Pierre Travo. Cell Image Analyzer - A visual scripting interface for ImageJ and its usage at the microscopy facility Montpellier RIO Imaging In: ImageJ User & Developer Conference - Conference Proceedings. Luxembourg: Centre de Recherche Public Henri Tudor; 2006 p. 105-110.

Automatic analysis of microscopy images

04/05/2011 05:14 PM

A talk about MRI-CIA held by Volker Bäcker, the first time the 13.12.2005 at the CRBM, Montpellier.

Cell Image Analyzer - ImageJ conference slides

04/05/2011 05:49 PM

Slides of the presentation held in 2006 at the ImageJ User and Developer Conference in Luxembourg by Volker Bäcker

Automatic measurement of plant features

04/05/2011 11:09 PM

Presentation about mri-cia held at the "WORKSHOP ON GROWTH PHENOTYPING AND IMAGING IN PLANTS" in Montpellier, in 2007


04/11/2011 10:14 AM

Dimitri Vibert: Développement d'un plugin de segmentation d'image cellulaire pour le logiciel libre ImageJ

frap-tool - analysis and design

06/22/2011 05:44 PM

The frap tool allows to export the intensity measurements of the brightest cube in a selected region in a series of 3d images from a FRAP experiment.
As an extension multiple selections for the region of interest should be possible within one experiment....