Feature #1213: count foci per nucleus - ImageJ-macros - MRI's Redmine

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Feature #1213

closed

count foci per nucleus

Added by Volker Baecker over 9 years ago. Updated over 8 years ago.

Status:

Closed

Priority:

Normal

Assignee:

Volker Baecker

Target version:

Start date:

11/10/2015

Due date:

% Done:

Estimated time:

Description

Train the gscd find-foci plugin to find the parameters.
See if in batch mode the mask channel defining the nuclei can be applied.

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foci.ijm (1.3 KB) foci.ijm		Volker Baecker, 11/24/2015 01:08 PM
foci.ijm (1.37 KB) foci.ijm		Volker Baecker, 11/25/2015 03:40 PM
MRI Count Foci.ijm (6.25 KB) MRI Count Foci.ijm		Volker Baecker, 12/09/2015 05:09 PM
MRI Count Foci.ijm (8.25 KB) MRI Count Foci.ijm		Volker Baecker, 12/17/2015 01:35 PM

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Updated by Volker Baecker over 9 years ago

File foci.ijm foci.ijm added

wrote a macro that detects foci and counts them per nucleus.

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Updated by Volker Baecker over 9 years ago

File foci.ijm foci.ijm added

version interactive

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Updated by Volker Baecker over 9 years ago

File MRI Count Foci.ijm MRI Count Foci.ijm added

Created a toolset that allows to
- count pre-defined (point selection) foci per nucleus
- use the maximum method to detect foci
- use the find foci method (from the GDSC plugin)

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