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Feature #103

closed

count number of segments

Added by Volker Baecker about 13 years ago. Updated about 13 years ago.

Status:
Closed
Priority:
Normal
Target version:
-
Start date:
06/07/2011
Due date:
07/15/2011
% Done:

0%

Estimated time:
8:00 h

Description

Create a macro that automatically counts the number of segments. The segments are crossing each other.
A first approach is:
- subtract image gaussian blur 10
- blur 3
- iso-threshold
- skeletonize
- create mask with particle analyzer min size 30
- run FindSkeletonEndPoints macro
- measure and report nr / 2


Files

drg9crb3sh1cov3_p79c3.TIF (4.13 MB) drg9crb3sh1cov3_p79c3.TIF example image containing segments to be counted Volker Baecker, 06/07/2011 10:06 AM
MRI_Count_Segments.txt (5.51 KB) MRI_Count_Segments.txt count segments toolset Volker Baecker, 06/28/2011 06:12 PM
Actions #2

Updated by Volker Baecker about 13 years ago

Laurent Cotter
Equipe Avenir 2
INSERM U1051-Institut des Neurosciences de Montpellier
Hopital St Eloi
80 Rue A. Fliche BP 74103
34091 Montpellier cedex 5 / France

Ph: +33 (0)4 99636106
Fax: +33 (0)4 99636020

Actions #3

Updated by Volker Baecker about 13 years ago

Actions #4

Updated by Volker Baecker about 13 years ago

  • Status changed from Feedback to Closed
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