MRI Convert Opera To Hyperstack

The tool converts images taken with the Opera into hyperstacks. The image names are in the form


where r is the row, c the column, f the field, p the z-position and ch the channel. The tool converts all images in the input folder. You can find an example image here: Download and unzip it and run the tool on the image folder.

Getting started

To install the tool, download the files Convert_Opera_To_Hyperstack.ijm and, save them into the folder macros/toolsets of your FIJI installation and
restart FIJI.

Select the "Convert Opera to Hyperstack" toolset from the >> button of the ImageJ launcher.

Options - series of input images for the Convert_Opera_To_Hyperstack tool (245 MB) Volker Baecker, 05/22/2018 04:39 PM

toolset.png (833 Bytes) Volker Baecker, 05/22/2018 04:43 PM

options.png (7.15 KB) Volker Baecker, 05/22/2018 04:43 PM