MRI Cell Image Analyzer

The MRI Grid is a tool in MRI Cell Image Analyzer, that can be used to associate measurements with labelled positions on a board.

The OMW allows to extract objects from large datasets. It has been created for the purpose of 3d-modelling but other usages are possible, for example object tracing in time series.

How to do 3d-modeling with the omw in 7 steps

A description of the operations available in the CIA. The documents is created from the online help.

The user-manual of the mri toolbox

The application measures the total length and the average thickness of filament like structures.

A description of the first version of the MRI Cell Image Analyzer that has been published as
Volker Bäcker and Pierre Travo. Cell Image Analyzer - A visual scripting interface for ImageJ and its usage at the microscopy facility Montpellier RIO Imaging In: ImageJ User & Developer Conference - Conference Proceedings. Luxembourg: Centre de Recherche Public Henri Tudor; 2006 p. 105-110.
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A talk about MRI-CIA held by Volker Bäcker, the first time the 13.12.2005 at the CRBM, Montpellier.

Slides of the presentation held in 2006 at the ImageJ User and Developer Conference in Luxembourg by Volker Bäcker

Presentation about mri-cia held at the "WORKSHOP ON GROWTH PHENOTYPING AND IMAGING IN PLANTS" in Montpellier, in 2007

Dimitri Vibert: Développement d'un plugin de segmentation d'image cellulaire pour le logiciel libre ImageJ

The frap tool allows to export the intensity measurements of the brightest cube in a selected region in a series of 3d images from a FRAP experiment.
As an extension multiple selections for the region of interest should be possible within one experiment....