// merge different channels in a folder into a hyperstack // and save it as a single image file // // written 2013 by Volker Baecker at Montpellier RIO Imaging channels = newArray("Cy3-", "Cy5-", "DAPI", "FITC"); colors = newArray("Magenta", "Red", "Blue", "Green"); dir = getDirectory("input folder"); files = getFileList(dir); baseChannel = channels[0]; setBatchMode(true); for (i=0; i