/** * Arabidopsis Seedlings Tools * * Use color thresholding to detect the amount of seedlings per well. * Automatic measurement of the different wells present in one image. * * written 2010-2012 by Volker Baecker (INSERM) at Montpellier RIO Imaging (www.mri.cnrs.fr) */ var helpURL = "http://dev.mri.cnrs.fr/wiki/imagej-macros/Arabidopsis_Seedlings_Tool"; var ROWS = 2; var COLUMNS = 3; var OFFSET_X = 280; var OFFSET_Y = 0; var WELL_DIAMETER = 1250; var L_MIN = 0; var L_MAX = 255; var a_MIN = 112; var a_MAX = 255; var b_MIN = 0; var b_MAX = 255; macro "Unused Tool - C037" { } macro "Arabidopsis Seedlings Tools Help Action Tool - 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"{ run('URL...', 'url='+helpURL); } macro "run batch measurements Action Tool - C037T4d14r" { // reset imagej settings run("Colors...", "foreground=white background=black selection=yellow"); run("Options...", "iterations=1 black count=1"); run("Set Measurements...", "area display redirect=None decimal=3"); run("Clear Results"); call("fr.cnrs.mri.macro.io.IOSettings.resetFileLists"); call("fr.cnrs.mri.macro.io.IOSettings.show"); waitForUser("Please select the input files using the IOSettings dialog and press ok"); setBatchMode(true); IJ.log("\\Clear"); list = call("fr.cnrs.mri.macro.io.IOSettings.getFileList"); files = split(list, ","); if (list=="none") { IJ.log("No files selected! Macro stopped."); setBatchMode("exit & display"); return; } for (i=0; i